calcium_bflow_analysis package¶

Subpackages¶

Submodules¶

calcium_bflow_analysis.analog_trace module¶

calcium_bflow_analysis.analysis_gui module¶

__author__ = Hagai Har-Gil

class AnalysisGui[source]¶

Bases: object

Main GUI for calcium-bloodflow analysis pipeline

calcium_bflow_analysis.analyze_ca_stacks_with_vessels module¶

calcium_bflow_analysis.caiman_funcs_for_comparison module¶

calcium_bflow_analysis.calcium_over_time module¶

calcium_bflow_analysis.calcium_trace_analysis module¶

calcium_bflow_analysis.dff_dataset module¶

calcium_bflow_analysis.dff_heatmap module¶

calcium_bflow_analysis.filter_cells module¶

calcium_bflow_analysis.fluo_metadata module¶

calcium_bflow_analysis.grid2d module¶

calcium_bflow_analysis.manual_rois module¶

calcium_bflow_analysis.roipoly module¶

calcium_bflow_analysis.single_fov_analysis module¶

calcium_bflow_analysis.trace_converter module¶

calcium_bflow_analysis.vasc_occ_analysis module¶

calcium_bflow_analysis.vasc_occ_parsing module¶

calcium_bflow_analysis.vessel_diameter_avg_to_sheet module¶

Module contents¶